MOSSCO chlorophyll

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          Ulrike Kleeberg
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          HZG Helmholtz-Zentrum Geesthacht
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                  ulrike.kleeberg@hzg.de
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          Dr. Carsten Lemmen
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          HZG Helmholtz-Zentrum Geesthacht
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                  Max-Planck-Str. 1
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                  carsten.lemmen@hzg.de
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          title: 
              MOSSCO chlorophyll
          date: 
            CI_Date: 
              date: 
                  2018-05-22
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              individualName: 
                  Dr. Carsten Lemmen
              organisationName: 
                  HZG Helmholtz-Zentrum Geesthacht
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                          Max-Planck-Str. 1
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                          Geesthacht
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                          21502
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                        Country: 
                          DE
                      electronicMailAddress: 
                          carsten.lemmen@hzg.de
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      abstract: 
          This parameter describe the volumetric mass concentration [in units of mg m-3] of phytoplankton (algal) 
          pigment chlorophyll a in the model’s surface layer. Chlorophyll a in photoautotrophic phytoplankton is used 
          to "harvest" sunlight energy and drive all cellular processes, especially the build-up of new biomass. In a 
          photoacclimative model such as MAECS, cells adapt their chlorophyll to biomass ratio to ambient light 
          concentration: when there is a lot of light (in summer and near the ocean surface), cells need less 
          chlorophyll per biomass than in darker conditions, such as in spring and in deeper water layers.
      purpose: 
          The maps shows the paraneter chlorophyll derived from the Model for Adaptive Ecosystems in Coastal Seas 
          (MAECS, Kerimoglu et al 2017) implemented as a FABM module; MAECS simulates pelagic nutrient, phytoplankton, 
          zooplankton and detritus dynamics and 210 accounts for the acclimatio
      credit: 
          HZG Helmholtz-Zentrum Geesthacht
      pointOfContact: 
        CI_ResponsibleParty: 
          individualName: 
              Dr. Carsten Lemmen
          organisationName: 
              HZG Helmholtz-Zentrum Geesthacht
          contactInfo: 
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              address: 
                CI_Address: 
                  deliveryPoint: 
                      Max-Planck-Str. 1
                  city: 
                      Geesthacht
                  postalCode: 
                      21502
                  country: 
                    Country: 
                      DE
                  electronicMailAddress: 
                      carsten.lemmen@hzg.de
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      descriptiveKeywords: 
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              Chlorophyll
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          statement: 
              As a physical driver, we employed the coastal ocean model GETM (General Estuarine Transport Model, 
              Klingbeil and Burchard 2013) to calculate sea level, currents, temperature and salinity distributions, 
              and to transport the biogeochemical and ecological quantities. GETM obtains state-of-the-art turbulence 
              closure from the General Ocean Turbulence Model (GOTM, Umlauf and Burchard, 2005), and has been shown to 
              have high skill in various studies for the North Sea.
              
Pelagic ecology was described by the Model for Adaptive Ecosystems in Coastal Seas (MAECS, Kerimoglu et al 2017) implemented as a FABM module; MAECS simulates pelagic nutrient, phytoplankton, zooplankton and detritus dynamics and 210 accounts for the acclimation of intracellular composition in phytoplankton (Wirtz and Kerimoglu, 2016).
              
Soil biogeochemistry was described by the Ocean Margin Experiment Early Diagenesis (OMEXDIA) model (Soetaert et al. 1996) with additional phosphorous added (Wirtz et al., unpublished.)
              
We employ the recently developed open source software infrastructure Modular System for Shelves and Coasts (MOSSCO, www.mossco.de, Lemmen et al 2017), which facilitates the exchangeable coupling of models and data sets and enables the integration of modules describing physical, chemical, geological, ecological and biogeochemical processes.
              
The presented Net Primary Production simulations are associated with the publication Slavik et al. 2017.
              
Kerimoglu, O., Hofmeister, R., Maerz, J., Riethmüller, R., Wirtz, K. W., 2017. The acclimative biogeochemical model of the southern North Sea. Biogeosciences, 14 (19), 4499-4531. https://doi.org/10.5194/bg-2017-104.
              
Klingbeil, K., Burchard, H., 2013. Implementation of a direct nonhydrostatic pressure gradient discretisation into a layered ocean model. Ocean Model. 65, 64-77, ISSN 1463-5003. https://doi.org/10.1016/j.ocemod.2013.02.002. metadataMaintenance: MD_MaintenanceInformation: maintenanceAndUpdateFrequency: MD_MaintenanceFrequencyCode: asNeeded
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